Publications

2026

  1. ProtoMech.png
    Protein Circuit Tracing via Cross-layer Transcoders
    Darin Tsui, Kunal Talreja , Daniel Saeedi , and 1 more author
    arXiv preprint arXiv:2602.12026, 2026
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  2. ddpm.gif
    cryoSENSE: Compressive Sensing Enables High-throughput Microscopy with Sparse and Generative Priors on the Protein Cryo-EM Image Manifold
    Zain Shabeeb , Daniel Saeedi , Darin Tsui, and 2 more authors
    In Conference on Computer Vision and Pattern Recognition (CVPR) , 2026
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2025

  1. SHAPzero.png
    SHAP zero explains biological sequence models with near-zero marginal cost for future queries
    Darin Tsui, Aryan Musharaf , Yigit Efe Erginbas , and 2 more authors
    In Conference on Neural Information Processing Systems (NeurIPS) , 2025
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  2. SpecMER.png
    SpecMER: Fast protein generation with K-mer guided speculative decoding
    Thomas Walton , Darin Tsui, Aryan Musharaf , and 1 more author
    In NeurIPS (Spotlight) , 2025
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  3. LowNSAE.png
    Sparse Autoencoders for Low-N Protein Function Prediction and Design
    Darin Tsui, Kunal Talreja , and Amirali Aghazadeh
    In NeurIPS AI4Science Workshop , 2025
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  4. GOLF.png
    GOLF: A generative AI framework for pathogenicity prediction of myocilin OLF variants
    Thomas Walton , Darin Tsui, Lauren Fogel , and 4 more authors
    In Machine Learning in Computational Biology , 2025
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  5. BipartiteGraph.png
    Efficient algorithm for sparse Fourier transform of generalized q-ary functions
    Darin Tsui, Kunal Talreja , and Amirali Aghazadeh
    In IEEE Information Theory Workshop (ITW) , 2025
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2024

  1. ICLR2024.png
    On recovering higher-order interactions from protein language models
    Darin Tsui, and Amirali Aghazadeh
    In ICLR Workshop on Generative and Experimental Perspectives for Biomolecular Design (GEM) , 2024
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  2. Microsys.png
    A low-cost, open-source-based optical surgical navigation system using stereoscopic vision
    Darin Tsui, Kirsten Ramos , Capalina Melentyev , and 5 more authors
    Microsystem Technologies, 2024
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2023

  1. ISPS.png
    An optical tracking approach to computer-assisted surgical navigation via stereoscopic vision
    Darin Tsui, Capalina Melentyev , Ananya Rajan , and 2 more authors
    In ASME 2023 32nd Conference on Information Storage and Processing Systems (ISPS) , 2023
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  2. GFET.png
    A machine learning approach to COVID-19 detection via graphene field-effect-transistor (GFET)
    Darin Tsui, Francisco Downey , Shreenithi Navaneethan , and 6 more authors
    In 2023 45th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) , 2023
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  3. Optical_EMBC.png
    Optical surgical navigation: a promising low-cost alternative
    Darin Tsui, Mitsuhiro Jo , Bryan Nguyen , and 2 more authors
    In 2023 45th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) , 2023
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